Basic Information
VIS ID
TVIS30008995
Fusion event
HIV-LOC105374995 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
27097821/27130042 (Hg38)
End
27097821/27130042 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374995
Nearest miRNA
hsa-mir-3691/Upstream/8558162; hsa-mir-10398/Downstream/17584;
Nearest TSS
ENST00000381078/Upstream/6821; ENST00000359193/Downstream/2506;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/32817, chr6-CpG: 74/Downstream/2353
Nearby gene
HIST1H2BJ(No orient, 2274)
Upstream sequence
tttcttctttttttttttttttttttgagacggagtcccctctgttgcccaggctggaatgcactgacacgatctcggctcactgcaacctatgcctcct
Downstream sequence
ggggtcaagtgattctcctgcctcagcctcccgaatagctgggattacagggtcccaccagcacatcaggctaatttttgtatttttagtagggacgggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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