Basic Information
VIS ID
TVIS30008996
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
27452333/27484554 (Hg38)
End
27452333/27484554 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3143/Upstream/336866; hsa-mir-10398/Downstream/3099778;
Nearest TSS
ENST00000381078/Upstream/11436; ENST00000625477/Downstream/209481;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/11268, chr6-CpG: 18/Downstream/10843
Nearby gene
ZNF184(No orient, 11436)
Upstream sequence
atttttcttagtgcagaacaaaatgaaaagtctcccatgtctacttctttctacacagacacggcaaccatccgatttctcaatcttttccccacctttc
Downstream sequence
ccgcctttctattccacaaagccgccattgtcatcctggcccgttctcaatgagctgttgggcacacctcccagacggggtggtggccgggcagaggggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate