Basic Information
VIS ID
TVIS30008999
Fusion event
HIV-ZNF968P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
28376175/28408398 (Hg38)
End
28376175/28408398 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF968P
Nearest miRNA
hsa-mir-3143/Upstream/1260710; hsa-mir-10398/Downstream/2175934;
Nearest TSS
ENST00000381078/Upstream/8664; ENST00000483784/Downstream/35069;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/8524, chr6-CpG: 20/Downstream/178688
Nearby gene
ZSCAN12(No orient, 8631)
Upstream sequence
GGTTAAGGGCTAACAACTGGCAGGATGCTTTCTGACATTCATTACATTTGTAGGGCCTCTCTCCAGTGTGTTTTTTTAAAAAAATGTCTAATACAGCTAC
Downstream sequence
CATTTGCACTTAAAGTCTTTTTACATTCTTCATGTAAAATGAAGATTGTAGGATTGGTCTCCTGCATAAGTTTTCTAAAGTTCAGTAAACCCTGGGCTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate