Basic Information
VIS ID
TVIS30009000
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
28392864/28425087 (Hg38)
End
28392864/28425087 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3143/Upstream/1277399; hsa-mir-10398/Downstream/2159245;
Nearest TSS
ENST00000381078/Upstream/25353; ENST00000483784/Downstream/18380;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/25213, chr6-CpG: 20/Downstream/161999
Nearby gene
ZSCAN23(No orient, 7568)
Upstream sequence
tggcagctatacccttacaaaatgtatttcttaaataataagacttgaaagttgaaattactccttgatctgtgggctgtggaatggttagctgtgttag
Downstream sequence
caggcatgaaaacaatattaacctttttgcacatctccctcagagctcttcagtgactcggtgcattgtcaatgagcagtaatatttcgaaaggaatctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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