Basic Information
VIS ID
TVIS30009001
Fusion event
HIV-HCG4B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
29893197/29925420 (Hg38)
End
29893197/29925420 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
HCG4B
Nearest miRNA
hsa-mir-3143/Upstream/2777732; hsa-mir-10398/Downstream/658912;
Nearest TSS
ENST00000381078/Upstream/51637; ENST00000638375/Downstream/15840;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/36632, chr6-CpG: 86/Downstream/943
Upstream sequence
ACTAATTTTTTTTAATTAATCAGGTTTTAAAAATACTAAGTGTTCCTATAAGATATACACACCACTTAGACGTGAATACTTCCTAAAAACAGGCAGCACA
Downstream sequence
TGAGCACTGCTGAGGGGCATTGTGACTGCATTGAACACTTGCAACTGTGAGGTGAATAAAGTCTGTACTGGCTCCCGGTTGCAACATATAGTAACGCAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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