Basic Information
VIS ID
TVIS30009003
Fusion event
HIV-HLA-L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
30233660/30265883 (Hg38)
End
30233660/30265883 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
HLA-L
Nearest miRNA
hsa-mir-3143/Upstream/3118195; hsa-mir-10398/Downstream/318449;
Nearest TSS
ENST00000381078/Upstream/31406; ENST00000428555/Downstream/23489;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/5405, chr6-CpG: 109/Downstream/60509
Upstream sequence
GGAGCAAACAATGACTTGCAAATTTTTCTAATTTAAACATAAAGGAGTGTACATATTGGTATTAGTATTCATTTTATTTTGGGGAAGGGCACTGTATTAG
Downstream sequence
TCCAtagtccgttttcacactgccgataaagacatacccaacattgggaagaaaaagaggtttaattggacttacagttccatttggctggggaggcctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate