Basic Information
VIS ID
TVIS30009004
Fusion event
HIV-HCG17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
30286383/30318606 (Hg38)
End
30286383/30318606 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
HCG17
Nearest miRNA
hsa-mir-3143/Upstream/3170918; hsa-mir-10398/Downstream/265726;
Nearest TSS
ENST00000381078/Upstream/11646; ENST00000428555/Downstream/7528;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/58128, chr6-CpG: 109/Downstream/7786
Upstream sequence
tccagggggaaatccacccccaggactcaatcacctcccaccaggccccacttccaacattggggattttcattcgacatgagatttgggaagggacaca
Downstream sequence
aatccatatcacaGACTGTATAAAGAACCCCTCCAGTccaggcgtagtggctcatgcctgtaatcccagggctctgggaggccaaggtgggaagagtgct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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