Basic Information
VIS ID
TVIS30009017
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
31180461/31212684 (Hg38)
End
31180461/31212684 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-3143/Upstream/321712; hsa-mir-10398/Downstream/142540;
Nearest TSS
ENST00000381078/Upstream/10671; ENST00000616296/Downstream/56982;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/14538, chr6-CpG: 116/Downstream/58391
Nearby gene
HCG27(No orient, 8716)
Upstream sequence
aaaacaaacaaacaaaaaaggtttatatggagaggcaaaaggcctagccagcacaatatagaaggaaaacaaagtcaaagtactgccacacctgacttca
Downstream sequence
agactttctataaaactgcagtaatccagacagATaattggtatagtcattgctggaaggagtatgaaggttcctcaaaaaattaaaatatagaactacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate