Fusion event
HIV-chr6 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
31586189/31618412 (Hg38)
Nearest miRNA
hsa-mir-3143/Upstream/263096; hsa-mir-10398/Downstream/15375;
Nearest cancer related gene
AIF1(TSG, No orient, 1391)
Upstream sequence
TTTCCGCAAACTTTTCTGCCTTCACTTTTCATAATGAATAAGCCGCCTCCTTTATTTAGCCATATCAGCCTAGGCACAGGCCCCCAAACTCATGCCTCCA
Downstream sequence
CTAATCTGTTCTCTGCACCTGAGATGTACACCTTCTTCTGAAACTTGGGTAAGTTCTAACTCGTTCTTCATATCTATTTATTTATATATTTTTGACAGAT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.