VISDB Viral Integration Site DataBase

VIS ID

TVIS30009020

Fusion event

HIV-PRRC2A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.33

Reference genome

Start

End

31591085/31623308 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-1303 ; hsa-mir-1180-3p ; hsa-mir-760 ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-423-5p ; hsa-mir-330-5p ; hsa-mir-296-3p ; hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-222-3p ; hsa-mir-106a-5p ; hsa-mir-25-3p ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-mir-218-5p ; hsa-mir-4316 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-3144-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-7106-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-874-5p ; hsa-mir-765 ; hsa-mir-3202 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-3179 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6783-5p ; hsa-mir-4779 ; hsa-mir-6753-5p ; hsa-mir-556-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-605-5p

Nearest miRNA

hsa-mir-3143/Upstream/267992; hsa-mir-10398/Downstream/10479;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/2061, chr6-CpG: 22/Downstream/8434

Upstream sequence

AAAAGTATTGAATGTTACATATCTCAGCCTTCTTGATAGGGATTTCATAGAtttttttttttttttttttttttttgagaccaagtttagctcctgttgc

Downstream sequence

ccaggctggagtgcaatggtgtgatcttgacttaccacaacctccacctcctgggtttaagcgattatcctgcctcagcctcctgagtagctgggattac