VISDB Viral Integration Site DataBase

VIS ID

TVIS30009028

Fusion event

HIV-PSMB9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.32

Reference genome

Start

End

32824235/32856458 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-659-3p ; hsa-mir-1257 ; hsa-mir-29b-2-5p ; hsa-mir-193b-5p ; hsa-mir-6798-5p ; hsa-mir-6732-5p ; hsa-mir-498 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-1267 ; hsa-mir-200c-5p ; hsa-mir-208a-3p ; hsa-mir-208b-3p ; hsa-mir-3617-5p ; hsa-mir-3658 ; hsa-mir-3664-5p ; hsa-mir-367-5p ; hsa-mir-4711-3p ; hsa-mir-4714-5p ; hsa-mir-499a-5p ; hsa-mir-514a-5p ; hsa-mir-550a-3p ; hsa-mir-550b-3p ; hsa-mir-641 ; hsa-mir-6733-3p ; hsa-mir-7856-5p

Nearest miRNA

hsa-mir-1236/Upstream/106479; hsa-mir-10398/Downstream/351377;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/1865, chr6-CpG: 35/Downstream/23263

Upstream sequence

GTGCTTGGGTCTCTGAATTTGTGGAGGAGGATCTGGGGTCTGAATGTGTATGTGACCTGTCCCAGTAGTGTACAGGGATGAGTAAAGGAATAGGGTCTGA

Downstream sequence

GAGGGGGACAGGAGATAGATTTTTGAGGGTCTTCTTTCCATCTGTGCTTAGGGATCAAAAAGATGATTCTGTCAAGCAGATACCTGGTTTCTCATTTACC