Basic Information
VIS ID
TVIS30009031
Fusion event
HIV-LOC100294145 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32866923/32899146 (Hg38)
End
32866923/32899146 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA6H
Target gene
LOC100294145
Nearest miRNA
hsa-mir-1236/Upstream/149167; hsa-mir-10398/Downstream/308689;
Nearest TSS
ENST00000381078/Upstream/43049; ENST00000584808/Downstream/37740;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/4138, chr6-CpG: 75/Downstream/68973
Upstream sequence
tggatttcagattatcttggattttaaaatatttgtatatacataatgagatatcttgaggccgggacccaagtctaagcatgaagttcacttatgtttc
Downstream sequence
ttatatacattatgcacatagcctgaaggtaattttataccatatttaaaataattttatatgtgaaatgaagttgtgttaagtacagtacttacatgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate