Basic Information
VIS ID
TVIS30009033
Fusion event
HIV-TAPBP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
33276635/33308858 (Hg38)
End
33276635/33308858 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
TAPBP
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-30a-5p ; hsa-mir-744-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-100-5p ; hsa-mir-1248 ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-5690 ; hsa-mir-5586-5p ; hsa-mir-646 ; hsa-mir-4668-5p ; hsa-mir-129-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-1298-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-4778-3p ; hsa-mir-561-3p ; hsa-mir-4327 ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-1292-3p ; hsa-mir-4740-3p ; hsa-mir-1246 ; hsa-mir-1290 ; hsa-mir-1291 ; hsa-mir-31-5p ; hsa-mir-3167 ; hsa-mir-328-3p ; hsa-mir-4685-5p ; hsa-mir-515-5p ; hsa-mir-519d-5p ; hsa-mir-519e-5p ; hsa-mir-597-3p ; hsa-mir-6775-3p ; hsa-mir-6837-5p ; hsa-mir-6851-3p ; hsa-mir-876-5p
Nearest miRNA
hsa-mir-1236/Upstream/18533; hsa-mir-10398/Downstream/129473;
Nearest TSS
ENST00000381078/Upstream/9534; ENST00000450504/Downstream/5097;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/9053, chr6-CpG: 58/Downstream/4477
Upstream sequence
catcgttagtgttcgtatattttatgcatggcccaagacaattcttctcccagtgtggctcagggaagccaaaagattggagacccctgATCTAAATACT
Downstream sequence
CCATGTACATGAAGGTCACTTTCACTGCTGTTTCTTCCCAGAAATGTCTAGGTCCTTCAGGTAGAAGTAATCTTTTTCTTCTTGTAATTATTTTTATGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate