VISDB Viral Integration Site DataBase

VIS ID

TVIS30009040

Fusion event

HIV-ILRUN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.31

Reference genome

Start

End

34627629/34659852 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-10b-5p ; hsa-mir-6510-5p ; hsa-mir-5739 ; hsa-mir-3175 ; hsa-mir-6734-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-3123 ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-766-5p ; hsa-mir-3605-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-3928-3p ; hsa-mir-4330 ; hsa-mir-4709-5p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-483-3p ; hsa-mir-1228-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5581-3p ; hsa-mir-8064 ; hsa-mir-6872-3p ; hsa-mir-7151-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-1236/Upstream/419116; hsa-mir-10398/Downstream/810656;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/115363, chr6-CpG: 55/Downstream/36443

Upstream sequence

ctgggattacaggcatgtgccaccacgctcggctaattttgtatttttagtagagacggggtttctccatgttggtcaggttggtctcgaactcccaacc

Downstream sequence

tcaggtgattcacccgctttggcctcccaaagtgctgggattacaggtgtgacccaccacgcccggccCATAAGGCAGTCTTAGGAAGAAAAATCATCTA