Basic Information
VIS ID
TVIS30009053
Fusion event
HIV-PI16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
36918549/36950773 (Hg38)
End
36918549/36950773 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
PI16
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-1236/Upstream/328261; hsa-mir-10398/Downstream/604592;
Nearest TSS
ENST00000381078/Upstream/2510; ENST00000491324/Downstream/3660;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/64622, chr6-CpG: 35/Downstream/8379
Upstream sequence
gctgggattacaggcatgtgccaccacacccggctaattttgcgcttttggcaaagacagggtttctccatgttggtcaggctggtctcgaactcctgac
Downstream sequence
ctcaggtgatccgcccgcctcggcctcccaaaatgctgtgattacaggcttgagccaccgtgcccggccaagtccctgcttttaactctttcgcgtatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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