Basic Information
VIS ID
TVIS30009055
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37117371/37149595 (Hg38)
End
37117371/37149595 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/527083; hsa-mir-10398/Downstream/405770;
Nearest TSS
ENST00000381078/Upstream/128053; ENST00000468243/Downstream/20608;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/104487, chr6-CpG: 203/Downstream/19699
Nearby gene
PIM1(No orient, 20551)
Nearest cancer related gene
PIM1(OG, No orient, 20551)
Upstream sequence
tgctgggattacaggggtgagccaccgcgcctggcAGCGAAGCTTATTTTAACCAGTCCCACGTTAGTGTTTGCCTGTCCCAGCTCACTCATTTTGGTTG
Downstream sequence
ATCTAGGCTCTAGTCACTCAGCCATTCCCAGAGAAGGTCCTAAATCTCTGAAAACTTTAGTATTGTTTTCAGAGTTTATTTTGCAGCAAATCATAGGGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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