Basic Information
VIS ID
TVIS30009056
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37156408/37188632 (Hg38)
End
37156408/37188632 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/566120; hsa-mir-10398/Downstream/366733;
Nearest TSS
ENST00000381078/Upstream/16138; ENST00000373491/Downstream/29857;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/16974, chr6-CpG: 29/Downstream/68950
Nearby gene
PIM1(No orient, 13204)
Nearest cancer related gene
PIM1(OG, No orient, 13204)
Upstream sequence
aaaggaaacagcaggcattgggatctacttgagaggggagggtgagaggatggagaggagctgaaaagataactattgggtactaggtttattacctggg
Downstream sequence
tgatgaaataatctgtacaacaaccccccacgacacgtgtttacctatgaacaaaccttcacatgtatccccaaacctaaaataaaagttaaaaaaataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate