VISDB Viral Integration Site DataBase

VIS ID

TVIS30009061

Fusion event

HIV-BTBD9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.2

Reference genome

Start

End

38483677/38515901 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-30e-5p ; hsa-mir-149-5p ; hsa-mir-26a-5p ; hsa-let-7b-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-5692a ; hsa-mir-574-5p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-4719 ; hsa-mir-1178-3p ; hsa-mir-369-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6781-5p ; hsa-mir-4268 ; hsa-mir-4660 ; hsa-mir-766-3p ; hsa-mir-7112-5p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-3918 ; hsa-mir-6736-3p ; hsa-mir-3065-3p ; hsa-mir-6871-3p ; hsa-mir-6749-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-600 ; hsa-mir-2116-3p ; hsa-mir-5193 ; hsa-mir-4700-3p ; hsa-mir-374c-5p ; hsa-mir-4643 ; hsa-mir-466 ; hsa-mir-4789-3p ; hsa-mir-655-3p

Nearest miRNA

hsa-mir-1236/Upstream/960479; hsa-mir-10398/Downstream/558413;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/696127, chr6-CpG: 77/Downstream/123528

Upstream sequence

GAAAAGCACAGAATAAATCATAAAGTACTACTTGACGCACCAAAAATTAAAAATGGAGACAGAGGGTGGATCAATGTGCACTGTCTCACAAACACAGTTT

Downstream sequence

CAAAGATAATTGGTAATGTTCTCTTTTTCCAAAGAAGTGAGGGTTAAATATAGTCACTCTGTACAGAGACTGATGATCTTCAGGATGTGTAAATTATACA