VISDB Viral Integration Site DataBase

VIS ID

TVIS30009070

Fusion event

HIV-RPL7L1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.1

Reference genome

Start

End

42854632/42886894 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-24-3p ; hsa-mir-877-3p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-3065-5p ; hsa-mir-153-3p ; hsa-mir-103b ; hsa-mir-3189-5p ; hsa-mir-4323 ; hsa-mir-3651 ; hsa-mir-676-3p ; hsa-mir-489-3p ; hsa-mir-636 ; hsa-mir-4679 ; hsa-mir-4712-3p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-183-5p ; hsa-mir-593-5p ; hsa-mir-549a ; hsa-mir-425-5p ; hsa-mir-513b-5p ; hsa-mir-582-5p ; hsa-mir-4307 ; hsa-mir-802 ; hsa-mir-4433b-3p ; hsa-mir-144-3p ; hsa-mir-33a-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-607 ; hsa-mir-4291 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-4424 ; hsa-mir-1468-3p ; hsa-mir-545-3p ; hsa-mir-95-5p ; hsa-mir-548p ; hsa-mir-3120-3p ; hsa-mir-3121-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548n ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-31-3p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-586 ; hsa-mir-4742-5p ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-34a-3p ; hsa-mir-7977 ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-3151-3p ; hsa-mir-136-5p ; hsa-mir-138-2-3p ; hsa-mir-4530 ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-1178-3p ; hsa-mir-6514-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-5008-5p ; hsa-mir-383-3p ; hsa-mir-5089-5p ; hsa-mir-4715-3p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1227-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6767-3p ; hsa-mir-6504-3p ; hsa-mir-3622a-5p ; hsa-mir-4438 ; hsa-mir-1245b-3p ; hsa-mir-1914-3p ; hsa-mir-31-5p ; hsa-mir-3184-5p ; hsa-mir-3934-3p ; hsa-mir-423-5p ; hsa-mir-4330 ; hsa-mir-4688 ; hsa-mir-5194 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6743-5p ; hsa-mir-6809-5p ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-191-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-4252 ; hsa-mir-5189-5p ; hsa-mir-5694 ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-873-3p

Nearest miRNA

hsa-mir-10398/Upstream/1153284; hsa-mir-10524/Downstream/547648;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/103200, chr6-CpG: 64/Downstream/3537

Upstream sequence

accatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatgagctgggtgtggtggcgcgtgcctgtagtcccagctactcgagaggct

Downstream sequence

aaggcaggaaaatcgcttgaacccaggaggcagagattgcagtgagccaagattgcaccagtgcactccagctgggcgacagagcgagactccatctcgg