Basic Information
VIS ID
TVIS30009079
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48438331/48470595 (Hg38)
End
48438331/48470595 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3272825; hsa-mir-10524/Downstream/3673754;
Nearest TSS
ENST00000381078/Upstream/401906; ENST00000335783/Downstream/992596;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/401701, chr6-CpG: 20/Downstream/992626
Nearby gene
PTCHD4(No orient, 401906)
Upstream sequence
TAATTTTTATATACACTTGAATAAAACGCCTTAATAAAACATTCTTCTGCTTTAAGTAAAGCACTCCCCAAAAATGGCATTTTTATTTTTTACAGATATG
Downstream sequence
CAACATGTGAAACTTAAAATATTATCCGAGAGAGAGAGACAAGCAGGATCTTTTATTCCATTAAGACTTATATTTAAACATATTCTCCTGTTAGTGTTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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