VISDB Viral Integration Site DataBase

VIS ID

TVIS30009082

Fusion event

HIV-CENPQ integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p12.3

Reference genome

Start

End

49446912/49479199 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-361-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-448 ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-605-5p ; hsa-mir-3074-3p ; hsa-mir-4768-3p ; hsa-mir-6888-5p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-548u ; hsa-mir-4735-5p ; hsa-mir-7161-5p ; hsa-mir-1321 ; hsa-mir-3162-5p ; hsa-mir-4653-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-5586-3p ; hsa-mir-6509-5p ; hsa-mir-6760-5p ; hsa-mir-374a-5p ; hsa-mir-21-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6126 ; hsa-mir-331-5p ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-3910 ; hsa-mir-599 ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-4760-3p ; hsa-mir-4282

Nearest miRNA

hsa-mir-10398/Upstream/4281429; hsa-mir-10524/Downstream/2665150;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/15776, chr6-CpG: 69/Downstream/71403

Upstream sequence

TGATAGCCTAATGATGATTTTTCTAAATAACTAGAGTTTGTCTTAACAGTTTAATGAGAATTATGATTTGTGGGGTTTTTGCTGCCTACTTTTTTCTTTA

Downstream sequence

CAAAAATTAAAATTTtatttgcaaacaatgcatcaaacaaaggtctgtatcaagactctattagaaacttaaacaaattagcaagcaaaaaaccaacaat