Basic Information
VIS ID
TVIS30009092
Fusion event
HIV-LOC101928516 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
75341613/74631897 (Hg38)
End
75341613/74631897 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA6D
Target gene
LOC101928516
Nearest miRNA
hsa-mir-10398/Upstream/1664144; hsa-mir-10524/Downstream/796510;
Nearest TSS
ENST00000381078/Upstream/36684; ENST00000421318/Downstream/10487;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/935486, chr6-CpG: 28/Downstream/453267
Upstream sequence
AGATGTCTCTGGAATATATTACATCACAGGTCCTGCGTGTCTGGGGTTATACATAAACAGTTGCTATCTTCTGGTCTCCAAGGCTACACTACAGTCTGTG
Downstream sequence
CAAATTAATTTCATTATAGTGTTGTTTTACATCATGAGCATTTGAAAACAGTTCATCATGGGGTTTCTCAAAGTTTACTTccctactatctacctccact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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