Basic Information
VIS ID
TVIS30009097
Fusion event
HIV-BCKDHB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
80920184/80210467 (Hg38)
End
80920184/80210467 (Hg38)
Orient
+
Location type
Intronic
Target gene
BCKDHB
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-10398/Upstream/1671158; hsa-mir-1202/Downstream/10102275;
Nearest TSS
ENST00000381078/Upstream/7365; ENST00000491328/Downstream/133104;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/103498, chr6-CpG: 231/Downstream/1540949
Nearest cancer related gene
BCKDHB(OG, No orient, 0)
Upstream sequence
gaggtaaaaaatagacaaaactaattgatgatgttagaagtcaggctagtgattatcatgagagtggttaataattggaagagtgtgtaagggctatgag
Downstream sequence
ttgctggtaacagtttcttgttctgagtgctgattattcaggttaaatttttgaaaactgagccgaacactcatttggtgcaccttttttgtatatatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate