Basic Information
VIS ID
TVIS30009099
Fusion event
HIV-DOP1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83818791/83109072 (Hg38)
End
83818791/83109072 (Hg38)
Orient
-
Location type
Exonic
Target gene
DOP1A
Nearest miRNA
hsa-mir-10398/Upstream/4569763; hsa-mir-1202/Downstream/7203670;
Nearest TSS
ENST00000381078/Upstream/12343; ENST00000604380/Downstream/13791;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/41090, chr6-CpG: 113/Downstream/83815
Upstream sequence
GTATGAGATATATTATCTGCCTTTGGGTAAAACACTGAAACCTGGTCTACAGGGATTGCTTACTGGTATTCTTCCTGGCTTAGAAGAAGGATCAGAGTAC
Downstream sequence
TATGAGAGGTAAGATCATATTTGGTGCAGTTATGTAATTGAAGTCATGGATTTGTCAGCAAGCATATTTAGGTCAAATATGTTTTAACATCACAAATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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