Basic Information
VIS ID
TVIS30009100
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.2
Reference genome
End
84175686/83465967 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/4926658; hsa-mir-1202/Downstream/6846775;
Nearby gene
ME1(No orient, 34748)
Upstream sequence
gatattggagacattaatcttgtaagccacactttcatcatctatgaaatgtggctgaatatttaccttatagggctttttgtaagtactaaatgtgaag
Downstream sequence
tgcttagaacaacatttggcaatactgggcatcaataaatggtagTGAGATACAACATTATTGCCACCCTGTGATGAGTTCTCCCTTGTACCTCTCACTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate