Basic Information
VIS ID
TVIS30009107
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
89715231/89005512 (Hg38)
End
89715231/89005512 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/10466203; hsa-mir-1202/Downstream/1307230;
Nearest TSS
ENST00000381078/Upstream/41791; ENST00000354922/Downstream/75155;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/41652, chr6-CpG: 149/Downstream/74906
Nearby gene
RNGTT(No orient, 41883)
Upstream sequence
taggtttttagataaactctttttgttttttgttttttgttcgtttgtttgtttttgtttttttgagatggagtcttgctctgtcaccaggctggagtac
Downstream sequence
agtggcacaatctcggctcactgcaatctccgcctcctggtttcaagcgattctcctgcctcagcctcctgagtatctgggattacaggtgcacgccact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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