Basic Information
VIS ID
TVIS30009112
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
91162815/90453096 (Hg38)
End
91162815/90453096 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/140263; hsa-mir-1202/Downstream/1068564;
Nearest TSS
ENST00000381078/Upstream/107877; ENST00000452624/Downstream/84122;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/155871, chr6-CpG: 64/Downstream/133543
Nearby gene
MAP3K7(No orient, 60477)
Nearest cancer related gene
MAP3K7(OG, No orient, 60477)
Upstream sequence
aaaatcaaaaattttgattgggcacaagtttcagatacttgcttaacatccatgtggcagtgccaaggagttcaaatagctggtgcgagggagagggagt
Downstream sequence
gatgggtatatacataatatttaaagccacgacactgagtgagactaatgagtgcagacgaagaagaggtcagagcacaaatcctgagctacttgaagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate