Basic Information
VIS ID
TVIS30009115
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
94937080/94227362 (Hg38)
End
94937080/94227362 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2705625; hsa-mir-1202/Downstream/3797169;
Nearest TSS
ENST00000381078/Upstream/63442; ENST00000369293/Downstream/1350088;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/807403, chr6-CpG: 69/Downstream/1350003
Nearby gene
TSG1(No orient, 450881)
Upstream sequence
gtgtagtgttttgactgagccaagatttgaacctaaggaatttggttcctgagcctgagccctaaattctgtatgatataATAGCCAATTTGCTTTAGTA
Downstream sequence
CATTTACtttcaacttttgtttttaatatataggacatttacttacattaaagcttattaagaagcttattataaaaatggatctaattggagcatcttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate