Basic Information
VIS ID
TVIS30009117
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
98691607/98243731 (Hg38)
End
98691607/98243731 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/219110; hsa-mir-1202/Downstream/880878;
Nearest TSS
ENST00000381078/Upstream/29048; ENST00000328345/Downstream/588777;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/960408, chr6-CpG: 50/Downstream/580787
Nearby gene
MIR2113(No orient, 219112)
Upstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaTTATGAAATataatagcatttcacatttttggtgctcccaaaatgccagagactatgctaaatactgtgtatatat
Downstream sequence
catctcttttaagtgtaccacaatctggagagggaagtataattgttatctccaatttgtaggtaaagagactagcccttaatgggattaaataatttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate