Basic Information
VIS ID
TVIS30009123
Fusion event
HIV-CRYBG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
106976975/106529100 (Hg38)
End
106976975/106529100 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
CRYBG1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-21-5p ; hsa-mir-25-3p ; hsa-mir-502-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-145-5p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-10398/Upstream/7404404; hsa-mir-1202/Downstream/255025;
Nearest TSS
ENST00000381078/Upstream/17245; ENST00000487681/Downstream/12034;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/15990, chr6-CpG: 236/Downstream/444240
Upstream sequence
tggtgcaatctcagctcactgcaacttctgcctcccaggggttcaagtgatcctcctgcctcagcctccagagtagctgggattacaggcacatgccaca
Downstream sequence
acacctggctaatttttgtgtttttagtagagacggggttttgccatattggccaggctgctctcgaacgcctgacctcaggtgatctgcccgcctaggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate