VISDB Viral Integration Site DataBase

VIS ID

TVIS30009126

Fusion event

HIV-SEC63 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

108205483/107884279 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-296-3p ; hsa-mir-30c-2-3p ; hsa-mir-15a-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4684-5p ; hsa-mir-520f-5p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4503 ; hsa-mir-4639-5p ; hsa-mir-299-5p ; hsa-mir-4686 ; hsa-mir-5680 ; hsa-mir-4662a-3p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-7856-5p ; hsa-mir-6792-5p ; hsa-mir-4318 ; hsa-mir-3692-3p ; hsa-mir-6083 ; hsa-mir-6867-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-339-5p ; hsa-mir-4528 ; hsa-mir-3675-3p ; hsa-mir-4668-5p ; hsa-mir-578 ; hsa-mir-203a-3p ; hsa-mir-526b-5p ; hsa-mir-627-3p ; hsa-mir-4635 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-5003-3p ; hsa-mir-7703 ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-483-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-10398/Upstream/1100059; hsa-mir-1202/Downstream/11184768;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/35693, chr6-CpG: 80/Downstream/73426

Upstream sequence

gaatcgcttgaacttggtaggcggaggttgcagtgagccactgcctgggtaacagagcatgactctgtctcaaaaaaaaaaaaaaaaaGAGCAGAGAGAG

Downstream sequence

ATACAGAAAAAGAAACTTaaaactaaaagttggttctttgaaaaggctaataaaattgattaaacccctaggcaagaatgatcaagaaaaaaaaagaata