Basic Information
VIS ID
TVIS30009129
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
108418873/108097669 (Hg38)
End
108418873/108097669 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/1313449; hsa-mir-1202/Downstream/10971378;
Nearest TSS
ENST00000381078/Upstream/22928; ENST00000426008/Downstream/25846;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/22530, chr6-CpG: 38/Downstream/17236
Nearby gene
OSTM1(No orient, 22932)
Upstream sequence
gcagaagaatatagctggacccctatctctcaccataaacaaaatttttaactcaagatggattaaagacttaaatgtatgacctgaaatggtaaaaatc
Downstream sequence
atagaagaaaacctagggaaaactcttctagacaatggcctaggcaaataatttatgactatgacctcaaaagcaaatgcaacaaaatcaaaaagagaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate