VISDB Viral Integration Site DataBase

VIS ID

TVIS30009132

Fusion event

HIV-SESN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

109349592/109028389 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-375 ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-let-7a-5p ; hsa-mir-377-3p ; hsa-mir-154-5p ; hsa-mir-125b-2-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-297 ; hsa-mir-3660 ; hsa-mir-3668 ; hsa-mir-3908 ; hsa-mir-3924 ; hsa-mir-3942-5p ; hsa-mir-429 ; hsa-mir-4330 ; hsa-mir-4526 ; hsa-mir-4703-5p ; hsa-mir-4731-3p ; hsa-mir-4766-3p ; hsa-mir-4801 ; hsa-mir-499b-5p ; hsa-mir-548e-5p ; hsa-mir-567 ; hsa-mir-6806-5p ; hsa-mir-7852-3p ; hsa-mir-8084 ; hsa-mir-888-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1296-3p ; hsa-mir-17-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-2467-3p ; hsa-mir-3144-5p ; hsa-mir-3191-3p ; hsa-mir-3609 ; hsa-mir-3612 ; hsa-mir-4459 ; hsa-mir-4499 ; hsa-mir-4514 ; hsa-mir-4652-5p ; hsa-mir-4692 ; hsa-mir-4695-5p ; hsa-mir-4796-3p ; hsa-mir-491-5p ; hsa-mir-501-3p ; hsa-mir-502-3p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-548ah-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6810-5p ; hsa-mir-6893-5p ; hsa-mir-873-3p ; hsa-mir-93-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10398/Upstream/2244169; hsa-mir-1202/Downstream/10040658;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/18555, chr6-CpG: 111/Downstream/65968

Upstream sequence

ATATATCTGTTGTATCTGACTATCTTCCCACAATAATTATTAAACATTCTACAGTACAGATAACTTTTTGGAGTAGGGGAAGAATGGGAATGAGAAGTTT

Downstream sequence

ATCTCGAATGGGGCTAATTTGTTGTTGTTGTTATCACAGGGACCAAATTTGACCTTAAAGTGTTCTGGTACATTTGCATGTATGTATGTTAAATTAAGTA