VISDB Viral Integration Site DataBase

VIS ID

TVIS30009134

Fusion event

HIV-CEP57L1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

109483544/109162341 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-4524a-3p ; hsa-mir-6823-5p ; hsa-mir-4717-3p ; hsa-mir-4781-3p ; hsa-mir-4524b-3p ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-4252 ; hsa-mir-4330 ; hsa-mir-153-5p ; hsa-mir-10b-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-3178 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4486 ; hsa-mir-5693 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-6761-5p ; hsa-mir-4324

Nearest miRNA

hsa-mir-10398/Upstream/2378121; hsa-mir-1202/Downstream/9906706;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/66797, chr6-CpG: 35/Downstream/127905

Upstream sequence

cacatGTGTGTGTATAACTTTCAAAACTTGATACTCATTCCTAGAACCAATTAtttgctttgctgttaatgttacctgaaaggttcttctctgtcctctc

Downstream sequence

tgttctctagtttttaccagtttaatatcttatatacaacctttccctcaatctctgcagcccatgttgaccttatccgactttggccttcttacatata