Basic Information
VIS ID
TVIS30009138
Fusion event
HIV-RPS19P5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
110885831/110564628 (Hg38)
End
110885831/110564628 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
RPS19P5
Nearest miRNA
hsa-mir-10398/Upstream/3780408; hsa-mir-1202/Downstream/8504419;
Nearest TSS
ENST00000381078/Upstream/86721; ENST00000368877/Downstream/181573;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/87630, chr6-CpG: 74/Downstream/81180
Nearby gene
CDK19(No orient, 45350)
Upstream sequence
tgcctgtaatcccagcgctttgggatgccaaggtaggaggatcacttgagccttagagttcaagactagcctgggcaacatagggagaccccgtctctac
Downstream sequence
aaaaaacaaaaatAATTTTTTTTAAAAAAAATCAGAAATCCACAAGGACAAAGAACTCACCCCCCCCCATCCTTCCTACCATCCTCCCTACCATCAGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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