Basic Information
VIS ID
TVIS30009143
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
115915456/115594292 (Hg38)
End
115915456/115594292 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/8810072; hsa-mir-1202/Downstream/3474755;
Nearest TSS
ENST00000381078/Upstream/1058417; ENST00000417846/Downstream/39899;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1250597, chr6-CpG: 74/Downstream/506218
Nearby gene
FRK(No orient, 347237)
Nearest cancer related gene
FRK(TSG, No orient, 347237)
Upstream sequence
gtgattcctcagggacctagaactagaaataccatttgacccagccatcccattactgtgtatatacccaaaggattataaatcatgctgctataaagac
Downstream sequence
acatgcatatgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaataatgatagactggattaagaaaatgtggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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