VISDB Viral Integration Site DataBase

VIS ID

TVIS30009144

Fusion event

HIV-KPNA5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q22.1

Reference genome

Start

End

117009398/116688235 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-196a-5p ; hsa-mir-192-5p ; hsa-let-7d-5p ; hsa-mir-155-5p ; hsa-mir-335-5p ; hsa-mir-3977 ; hsa-mir-411-5p ; hsa-mir-499a-5p ; hsa-mir-6832-5p ; hsa-mir-376a-2-5p ; hsa-mir-511-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-576-3p ; hsa-mir-4662a-3p ; hsa-mir-4432 ; hsa-mir-8087 ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-6826-5p ; hsa-mir-4698 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-5001-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-3127-5p ; hsa-mir-6801-5p ; hsa-mir-760 ; hsa-mir-3194-3p ; hsa-mir-4502 ; hsa-mir-3918 ; hsa-mir-5088-5p ; hsa-mir-1305 ; hsa-mir-4279 ; hsa-mir-197-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-5571-5p

Nearest miRNA

hsa-mir-10398/Upstream/9904015; hsa-mir-1202/Downstream/2380812;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/6601, chr6-CpG: 112/Downstream/76341

Upstream sequence

AATAGGATACCCATGAAGCTTTCAGAAGTCCCTAAGGCACAATTAGTTGCCATATCTTCACTGCTCTCTCAAGATTTAAAGCATGTATTTTAGTGTACTC

Downstream sequence

CTTACAATAAAATTTGCCAATTCATTAGTCTGTCTCTTCAATATCAGGGATGGCAGACAGATGCCAGCCTCTCCTTCTCTTGTGTTTACTTCATAAGCTA