Basic Information
VIS ID
TVIS30009147
Fusion event
HIV-GOPC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
117921616/117600453 (Hg38)
End
117921616/117600453 (Hg38)
Orient
-
Location type
Intronic
Target gene
GOPC
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-103a-3p
Nearest miRNA
hsa-mir-10398/Upstream/10816233; hsa-mir-1202/Downstream/1468594;
Nearest TSS
ENST00000381078/Upstream/26882; ENST00000368494/Downstream/1911;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/52086, chr6-CpG: 55/Downstream/1740
Nearest cancer related gene
GOPC(OG, No orient, 0)
Upstream sequence
acagagtactcatgatccagtctcctcttaaaggccccacattggagattcaatactgtcacattgaggattaagtttcccatacacgaaatttggggga
Downstream sequence
cacattcgaattataccaTGTGGTAAAGGCTACTCTTGATCTTTGTTGTTTAAAGCTAGAGAACTAATggccaggcacagtagctcatgtctgtaatcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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