Basic Information
VIS ID
TVIS30009151
Fusion event
HIV-TPD52L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
125512490/125191344 (Hg38)
End
125512490/125191344 (Hg38)
Orient
+
Location type
Intronic
Target gene
TPD52L1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-203a-3p ; hsa-mir-8066 ; hsa-mir-4695-5p ; hsa-mir-5589-3p ; hsa-mir-6891-5p ; hsa-mir-548p ; hsa-mir-3173-3p ; hsa-mir-8069 ; hsa-mir-4724-5p ; hsa-mir-6513-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p
Nearest miRNA
hsa-mir-10398/Upstream/5176087; hsa-mir-1202/Downstream/1293287;
Nearest TSS
ENST00000381078/Upstream/36963; ENST00000532423/Downstream/12295;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/36746, chr6-CpG: 54/Downstream/110214
Upstream sequence
CCAATTTCCTGCTGAATGATTTTGCAGAAGAACAAATTGTCCTTTGGCATTTGCACCTGTATGTCGCTCATTGTCCACTTGCTTGATGTGTTTCTGTGAA
Downstream sequence
AGGGGGCAGCTTTTCCTTTTCTAAATGAAGAAGGGAGAGTCCAAACGTTTTTTTCCAGCTCCCATCAAAATATGGACTTAATTCCTTTTCTTTGATTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate