Basic Information
VIS ID
TVIS30009153
Fusion event
HIV-NCOA7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
126173568/125852422 (Hg38)
End
126173568/125852422 (Hg38)
Orient
+
Location type
Intronic
Target gene
NCOA7
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-5680 ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-32-3p ; hsa-mir-543 ; hsa-mir-1976 ; hsa-mir-2115-5p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4722-3p ; hsa-mir-498 ; hsa-mir-516a-3p ; hsa-mir-516b-3p ; hsa-mir-5571-5p ; hsa-mir-6727-3p ; hsa-mir-6728-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-7162-5p
Nearest miRNA
hsa-mir-10398/Upstream/5837165; hsa-mir-1202/Downstream/632209;
Nearest TSS
ENST00000381078/Upstream/33564; ENST00000433571/Downstream/47487;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/61088, chr6-CpG: 72/Downstream/104224
Upstream sequence
gtagctgggactacaggcacgtgccaccatgtctggctaatttttgtatctttagtagagatggggtttcaccatgttgatcaggctggtctcgaactct
Downstream sequence
agaccttgtgatctgcctgcttaggcctcccaaagtgctgggattatagggtgagccaccgcgcccagcccagaagaatttttactaggttttcttctag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate