Basic Information
VIS ID
TVIS30009154
Fusion event
HIV-TRMT11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
126396219/126075073 (Hg38)
End
126396219/126075073 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRMT11
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10398/Upstream/6059816; hsa-mir-1202/Downstream/409558;
Nearest TSS
ENST00000381078/Upstream/68231; ENST00000444229/Downstream/102120;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/88288, chr6-CpG: 27/Downstream/264916
Nearby gene
TRMT11(No orient, 35799)
Upstream sequence
ttttaaaaataataGTTGATAATACATTTTAGAAAAGTTCTCATAAGACCTCAAAAAATCATTTTAACATAAGCTGAACATCCTTTTCAGGGTGTCGAGT
Downstream sequence
TTCTGCTATTGTGTTCTAAATGCCAATTAAGTGCTCTGTGTAAGAAAAACACATATTGTCTGCAAATTAATCAGGAAGACACATGCAGGATACCTTGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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