Basic Information
VIS ID
TVIS30009160
Fusion event
HIV-L3MBTL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
130441186/130120041 (Hg38)
End
130441186/130120041 (Hg38)
Orient
+
Location type
Intronic
Target gene
L3MBTL3
Nearest miRNA
hsa-mir-10398/Upstream/3635328; hsa-mir-1202/Downstream/1672131;
Nearest TSS
ENST00000381078/Upstream/49194; ENST00000617887/Downstream/18155;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/98736, chr6-CpG: 134/Downstream/245228
Upstream sequence
TATTTGTTGGGATATTTTGTTTCAAATGTATTTGCCCCGTTATTAAAACTTAACAGAAGTATGCTCTGGATCTTTAAGAAACTCACGTATATTTGTAACG
Downstream sequence
GTAACAGCATGTATGAAACAGTAGCACATCATAAACACAGAATACTATAAAGCACTAAAGTGTGTAGGCCAGATAGCATATTCTGGATAGAAGAAATTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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