Basic Information
VIS ID
TVIS30009161
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
130836814/130515669 (Hg38)
End
130836814/130515669 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/4030956; hsa-mir-1202/Downstream/1276503;
Nearest TSS
ENST00000381078/Upstream/78552; ENST00000454262/Downstream/181643;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/149078, chr6-CpG: 144/Downstream/546622
Nearby gene
TMEM200A(No orient, 72604)
Upstream sequence
AGCAAATGTGATTCCCCAGTTAGAACTTCCATGACAAATTTTACCATATATAGAAACTCTTGACCATCTTATTTTCTTAAGGTACTAATTGGTTTCTTTA
Downstream sequence
TTTTAAAGCTACAGAGCCCAGACCAATGTCGATACTGTTAACACCACTTTAACAGCCAGCTCTGTATCAACTCAGGGTTCCTACTGATGAGTAGAGAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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