Basic Information
VIS ID
TVIS30009167
Fusion event
HIV-LOC105378010 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
135430972/135109834 (Hg38)
End
135430972/135109834 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378010
Nearest miRNA
hsa-mir-10398/Upstream/130402; hsa-mir-1202/Downstream/129326;
Nearest TSS
ENST00000381078/Upstream/6778; ENST00000420123/Downstream/71481;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/54831, chr6-CpG: 216/Downstream/71016
Nearby gene
HBS1L(No orient, 54936)
Upstream sequence
tatttttcaggatcttcagtacatatttaatggtggtagttttgcaaaaatccttgtatttgtaggaattcttctgatatttcaccaaaaggatgcttgc
Downstream sequence
tactggttcttggtaaagtcctaggctattaagatttctatctttatgagttcttgattgtttaccagtaaatgttatttttcatatctgttgagataat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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