Basic Information
VIS ID
TVIS30009168
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
135437286/135116148 (Hg38)
End
135437286/135116148 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/136716; hsa-mir-1202/Downstream/123012;
Nearest TSS
ENST00000381078/Upstream/13092; ENST00000420123/Downstream/65167;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/61145, chr6-CpG: 216/Downstream/64702
Nearby gene
HBS1L(No orient, 61250)
Upstream sequence
tgaaatgcgtatgtatgtgtgaactacaaactacgaattgctcaatttcggtaattccgcaatactaaggcaatgctcttacgtttgcttgtaagactag
Downstream sequence
ccatgcacaaaataaaaatgagcagtaaaattcatgctaatgatttcaagttttaatttttctttacatagaataacattaattagaaaataaaaaacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate