Basic Information
VIS ID
TVIS30009171
Fusion event
HIV-BCLAF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
136583933/136262795 (Hg38)
End
136583933/136262795 (Hg38)
Orient
+
Location type
Intronic
Target gene
BCLAF1
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-877-3p ; hsa-mir-423-5p ; hsa-mir-342-5p ; hsa-mir-22-5p ; hsa-mir-615-3p ; hsa-mir-26b-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-142-3p ; hsa-mir-561-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-424-3p ; hsa-mir-146a-5p ; hsa-mir-194-5p
Nearest miRNA
hsa-mir-10398/Upstream/1023539; hsa-mir-1202/Downstream/2172418;
Nearest TSS
ENST00000381078/Upstream/12460; ENST00000607749/Downstream/5527;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/12119, chr6-CpG: 107/Downstream/26215
Upstream sequence
GAGTTTATTACAAACCCAAAATAAACTACTTTAAAATAGTCTGCCACTAAAAATAATGCCCACTCCACTACATAATTTCATGCTCCCTTATCACATTAAC
Downstream sequence
ATACCCAACTCCAGAGGCTGTGTTTTTTTATGATTTTTACACAATACACCATGGATTCtgggaagaggttttggagtagaagcatgggtttaaatcttat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate