Basic Information
VIS ID
TVIS30009172
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
137397773/137076636 (Hg38)
End
137397773/137076636 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1837380; hsa-mir-1202/Downstream/1358577;
Nearest TSS
ENST00000381078/Upstream/31456; ENST00000642830/Downstream/97012;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/31647, chr6-CpG: 59/Downstream/142353
Nearby gene
IL20RA(No orient, 31456)
Upstream sequence
AATATGGAAGGATAAATATTATTGGTAGAACCTGGTCTGCAATTAGAATTTTCCTGGAGTTTCACAGGGTTCTCCAGCTTGAAAGGACAAAAAGCAGAAG
Downstream sequence
TTGGGATCTGGAGCATAGTGGGCTCCACCCTCAGCCATCTCTGTGCCCAGCACATTGGAGATGCAGCCAGCTAGCCACTGGGTGTCACTGTTCTCTCATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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