Basic Information
VIS ID
TVIS30009174
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
138258116/137936979 (Hg38)
End
138258116/137936979 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2697723; hsa-mir-1202/Downstream/498234;
Nearest TSS
ENST00000381078/Upstream/61141; ENST00000434437/Downstream/8387;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/68975, chr6-CpG: 65/Downstream/170072
Nearby gene
TNFAIP3(No orient, 53665)
Nearest cancer related gene
TNFAIP3(TSG, No orient, 53665)
Upstream sequence
gtaatcattgaaattttctatatataagatcatgtgatctgttttctatatataagatcatgtgatcatgtgattttactttttcctttatgatttgaag
Downstream sequence
ttttctatttctttttcttgcctaatagctctggctaggacttctaatgctaccttgaatagaagtgttgacaataagtatccttatcttattcctaatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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