Fusion event
HIV-chr6 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
138279389/137958252 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2718996; hsa-mir-1202/Downstream/476961;
Nearest cancer related gene
Upstream sequence
TTTGTATTTCTCACAGCTAGACCATCAGCAAAGCAGAGGGCCCTCCAGAGACTAAGGTCACCCATTAGAAGACAGTAAGGAGTTATAAATGTGAACAAAC
Downstream sequence
TGTATCCTTTCCAACTGTATCTCCAATTGTGCTTTGCTGTTTTATTATTTCTAATAACAGCCATCTCTCTTTGTGGTTAAGATTTCAGAAACTACATAAG
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.