Basic Information
VIS ID
TVIS30009177
Fusion event
HIV-LOC107986651 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
139773036/139451899 (Hg38)
End
139773036/139451899 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986651
Nearest miRNA
hsa-mir-10398/Upstream/1016605; hsa-mir-1202/Downstream/753353;
Nearest TSS
ENST00000381078/Upstream/77279; ENST00000414038/Downstream/22697;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/76458, chr6-CpG: 46/Downstream/2636437
Nearby gene
LINC01625(No orient, 17096)
Upstream sequence
CTACCAAAGAAGCTGAAGTGCATTTTAAGTGTGTATTATCTTCAGTGTTATTGCCTGATACAAGGACAGAATATGAGACCAAGTATCTCTATCCAGGGAA
Downstream sequence
TGCATAAATTCCAACTCTGGGTTATATTTCATTATGCTCCAGAAATATCCTGGATGATTAAAGTAATTCATTGTAAAAAAAATGCACCAATTCCTACAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate